Conference and other publications

2021
Maria Ines Meyer, Ezequiel de la Rosa, Nuno Barros, Roberto Paolella, Koen Van Leemput, Diana M. Sima An augmentation strategy to mimic multi-scanner variability in MRI. International Symposium on Biomedical Imaging (ISBI 2021). April 2021

2020
Viana JS, de la Rosa E, Vyvere TV, Robben D, Sima DM. Unsupervised 3D Brain Anomaly Detection. MICCAI Brain Lesion Workshop (BrainLes 2020), Lima, Peru, October 2020.
de la Rosa, E., Robben, D., Sima, D.M., Kirschke, J.S. and Menze, B., 2020, October. Differentiable Deconvolution for Improved Stroke Perfusion Analysis. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 593-602). Springer, Cham.
Amnah Mahroo, Josepha F. Hilmer, Nora-Josefin Breutigam, Michael Chappell, Matthias Günther Exchange time as a proxy measure of blood brain barrier integrity – A two-stage estimation ESMRMB 2020.
Amnah Mahroo, Nora-Josefin Breutigam, Matthias Günther Assessing Repeatability of Blood Brain Barrier Permeability Measure Using Contrast-free MRI ISMRM 2020.
Nora-Josefin Breutigam, Daniel Christopher Hoinkiss, Mareike Alicja Buck, Amnah Mahroo, Federico von Samson-Himmelstjerna, Matthias Günther Optimal subject-specific pCASL settings by automated inner-scan timing adaption ISMRM 2020.
Francesco La Rosa, Erin S Beck, Ahmed Abdulkadir, Jean-Philippe Thiran, Daniel S Reich, Pascal Sati, Meritxell Bach Cuadra Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T MRI International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2020.
Andrey Zhylka, Alexander Leemans, Josien Pluim, Alberto De Luca Anatomically informed multi-level fiber tractography for improved sensitivity of white matter bundle reconstruction in diffusion MRI ISMRM 2020.
Andrey Zhylka, Nico Sollmann, Alberto De Luca, Daniel Krahulec, Marcel Breeuwer, Alexander Leemans, Josien Pluim Multi-level fiber tracking: evaluation on clinical data ISMRM 2020.

2019
Billast M., Meyer M.I., Sima D.M., Robben D. Improved inter-scanner MS lesion segmentation by adversarial training on longitudinal data MICCAI Brain Lesion Workshop (BrainLes 2019), Shenzhen, China, October 2019.
S. Shit, A. Ravi Venkatakrishnan, I. Ezhov, J. Lipkova, M. Piraud, B. Menze Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee Machine Learning with Guarantees NeurIPS 2019 (Workshop), Vancouver, Canada, December 2019.
J. Paetzold, S. Shit, I. Ezhov, G. Tetteh, A. Ertürk, B. Menze clDice-a Novel Connectivity-Preserving Loss Function for Vessel Segmentation Medical Imaging Meets NeurIPS 2019 (Workshop), Vancouver, Canada, December 2019. * Joint first author
Meyer M.I., de la Rosa E., Van Leemput K., Sima D.M. Relevance Vector Machines for Harmonization of MRI Brain Volumes Using Image Descriptors Proceedings of the 2nd Workshop on Machine Learning in Clinical Neuroimaging (MLCN 2019), Shenzhen, China, October 2019.
A. Zhylka, A. Leemans, J. Pluim, A. De Luca On fiber orientation distribution peak selection for diffusion MRI fiber tractography Magnetic Resonance Materials in Physics (2019) 32(Supplement 1): 1
F. Navarro, S. Shit, I. Ezhov, J. Paetzold, A. Gafita, J. Peeken, S. Combs, B. Menze Shape-Aware Complementary-Task Learning for Multi-Organ Segmentation Proceedings of the 10th International Workshop on Machine Learning in Medical Imaging (MLMI 2019), Shenzhen, China, October 2019. * Joint first author
I. Ezhov, J. Lipkova, S. Shit, F. Kofler, N. Collomb, B. Lemasson, E. Barbier, B. Menze Neural parameters estimation for brain tumor growth modeling Proceedings of the 22th International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Shenzhen, China, October 2019.
L. Fidon, M. Ebner, L. C. Garcia-Peraza-Herrera, M. Modat, S. Ourselin, T. Vercauteren Incompressible image registration using divergence-conforming B-splines MICCAI 2019.
Canalini, L., Klein, J., Miller, D., Kikinis, R. Registration of ultrasound volumes based on Euclidean distance transform, CuRIOUS Challenge, MICCAI 2019.
L. Ning, E. Bonet-Carne, F. Grussu, F. Sepehrband, E. Kaden, J. Veraart, S. Blumberg, C. S. Khoo, M. Palombo, J. Coll-Font, B. Scherrer, S. Warfield, S. Karayumak, Y. Rathi, S. Koppers, L. W., J. Ebert, D. Merhof, D. Moyer, M. Pietsch, D. Christiaens, R. Teixeira, J.-D. Tournier, A. Zhylka, J. Pluim, G. Parker, U. Rudrapatna, J. Evans, C. Charron, D. Jones, C.Tax Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results ISMRM 2019
L. Ning, E. Bonet-Carne, F. Grussu, F. Sepehrband,E. Kaden, J. Veraart, S. B. Blumberg, C. S. Khoo, M. Palombo, J. Coll-Font, B. Scherrer, S. K. Warfield, Su C. Karayumak, Y. Rathi, S. Koppers, L. Weninger, J. Ebert, D. Merhof, D. Moyer, M. Pietsch, D. Christiaens, R. Teixeira, J.-D. Tournier, A. Zhylka, J. Pluim, G. Parker, U. Rudrapatna, J. Evans, C. Charron, D. K. Jones and C. W. M. Tax Muti-shell Diffusion MRI Harmonisationand Enhancement Challenge(MUSHAC): Progress and Results Computational Diffusion MRI: International MICCAI Workshop, Granada, Spain, September 2018. Springer, p. 217-224
de la Rosa, E., Sima, D. M., Vyvere, T. V., Kirschke, J. S., & Menze, B. (2018). A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans. International Symposium on Biomedical Imaging (ISBI), Venice, Italy (2019).
T. Yu; M. Pizzolato; E. J. Canales-Rodrı́guez; J.-P. Thiran Robust T2 Relaxometry with Hamiltonian MCMC for Myelin Water Fraction Estimation. IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, April 8-11, 2019.
T. Yu; M. Pizzolato; G. Girard; J. R. Patino Lopez; E. Jorge Canales-Rodriguez et al. Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler. Information Processing in Medical Imaging (IPMI 2019), Hong Kong, June 2-7 2019.

2018

La Rosa, Francesco, Mário João Fartaria, Tobias Kober, Jonas Richiardi, Cristina Granziera, Jean-Philippe Thiran, Meritxell Bach Cuadra Shallow vs deep learning architectures for white matter lesion segmentation in the early stages of multiple sclerosis. International MICCAI Brainlesion Workshop. Springer, Cham, 2018.